{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Tutotial" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:30.548277522Z", "start_time": "2023-08-21T04:49:27.607193094Z" } }, "outputs": [ { "data": { "application/javascript": [ "(function(root) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " var force = true;\n", " var py_version = '3.2.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n", " var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n", " var reloading = false;\n", " var Bokeh = root.Bokeh;\n", " var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n", "\n", " if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n", " root._bokeh_timeout = Date.now() + 5000;\n", " root._bokeh_failed_load = false;\n", " }\n", "\n", " function run_callbacks() {\n", " try {\n", " root._bokeh_onload_callbacks.forEach(function(callback) {\n", " if (callback != null)\n", " callback();\n", " });\n", " } finally {\n", " delete root._bokeh_onload_callbacks;\n", " }\n", " console.debug(\"Bokeh: all callbacks have finished\");\n", " }\n", "\n", " function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n", " if (css_urls == null) css_urls = [];\n", " if (js_urls == null) js_urls = [];\n", " if (js_modules == null) js_modules = [];\n", " if (js_exports == null) js_exports = {};\n", "\n", " root._bokeh_onload_callbacks.push(callback);\n", "\n", " if (root._bokeh_is_loading > 0) {\n", " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n", " return null;\n", " }\n", " if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n", " run_callbacks();\n", " return null;\n", " }\n", " if (!reloading) {\n", " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n", " }\n", "\n", " function on_load() {\n", " root._bokeh_is_loading--;\n", " if (root._bokeh_is_loading === 0) {\n", " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n", " run_callbacks()\n", " }\n", " }\n", " window._bokeh_on_load = on_load\n", "\n", " function on_error() {\n", " console.error(\"failed to load \" + url);\n", " }\n", "\n", " var skip = [];\n", " if (window.requirejs) {\n", " window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n", " require([\"jspanel\"], function(jsPanel) {\n", "\twindow.jsPanel = jsPanel\n", "\ton_load()\n", " })\n", " require([\"jspanel-modal\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-tooltip\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-hint\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-layout\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-contextmenu\"], function() {\n", "\ton_load()\n", " })\n", " require([\"jspanel-dock\"], function() {\n", "\ton_load()\n", " })\n", " require([\"gridstack\"], function(GridStack) {\n", "\twindow.GridStack = GridStack\n", "\ton_load()\n", " })\n", " require([\"notyf\"], function() {\n", "\ton_load()\n", " })\n", " root._bokeh_is_loading = css_urls.length + 9;\n", " } else {\n", " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n", " }\n", "\n", " var existing_stylesheets = []\n", " var links = document.getElementsByTagName('link')\n", " for (var i = 0; i < links.length; i++) {\n", " var link = links[i]\n", " if (link.href != null) {\n", "\texisting_stylesheets.push(link.href)\n", " }\n", " }\n", " for (var i = 0; i < css_urls.length; i++) {\n", " var url = css_urls[i];\n", " if (existing_stylesheets.indexOf(url) !== -1) {\n", "\ton_load()\n", "\tcontinue;\n", " }\n", " const element = document.createElement(\"link\");\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.rel = \"stylesheet\";\n", " element.type = \"text/css\";\n", " element.href = url;\n", " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n", " document.body.appendChild(element);\n", " } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n", " var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n", " for (var i = 0; i < urls.length; i++) {\n", " skip.push(urls[i])\n", " }\n", " } var existing_scripts = []\n", " var scripts = document.getElementsByTagName('script')\n", " for (var i = 0; i < scripts.length; i++) {\n", " var script = scripts[i]\n", " if (script.src != null) {\n", "\texisting_scripts.push(script.src)\n", " }\n", " }\n", " for (var i = 0; i < js_urls.length; i++) {\n", " var url = js_urls[i];\n", " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.src = url;\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " document.head.appendChild(element);\n", " }\n", " for (var i = 0; i < js_modules.length; i++) {\n", " var url = js_modules[i];\n", " if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onload = on_load;\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.src = url;\n", " element.type = \"module\";\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " document.head.appendChild(element);\n", " }\n", " for (const name in js_exports) {\n", " var url = js_exports[name];\n", " if (skip.indexOf(url) >= 0 || root[name] != null) {\n", "\tif (!window.requirejs) {\n", "\t on_load();\n", "\t}\n", "\tcontinue;\n", " }\n", " var element = document.createElement('script');\n", " element.onerror = on_error;\n", " element.async = false;\n", " element.type = \"module\";\n", " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " element.textContent = `\n", " import ${name} from \"${url}\"\n", " window.${name} = ${name}\n", " window._bokeh_on_load()\n", " `\n", " document.head.appendChild(element);\n", " }\n", " if (!js_urls.length && !js_modules.length) {\n", " on_load()\n", " }\n", " };\n", "\n", " function inject_raw_css(css) {\n", " const element = document.createElement(\"style\");\n", " element.appendChild(document.createTextNode(css));\n", " document.body.appendChild(element);\n", " }\n", "\n", " var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.2.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.2.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.2.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.2.2.min.js\", \"https://cdn.holoviz.org/panel/1.2.1/dist/panel.min.js\"];\n", " var js_modules = [];\n", " var js_exports = {};\n", " var css_urls = [];\n", " var inline_js = [ function(Bokeh) {\n", " Bokeh.set_log_level(\"info\");\n", " },\n", "function(Bokeh) {} // ensure no trailing comma for IE\n", " ];\n", "\n", " function run_inline_js() {\n", " if ((root.Bokeh !== undefined) || (force === true)) {\n", " for (var i = 0; i < inline_js.length; i++) {\n", " inline_js[i].call(root, root.Bokeh);\n", " }\n", " // Cache old bokeh versions\n", " if (Bokeh != undefined && !reloading) {\n", "\tvar NewBokeh = root.Bokeh;\n", "\tif (Bokeh.versions === undefined) {\n", "\t Bokeh.versions = new Map();\n", "\t}\n", "\tif (NewBokeh.version !== Bokeh.version) {\n", "\t Bokeh.versions.set(NewBokeh.version, NewBokeh)\n", "\t}\n", "\troot.Bokeh = Bokeh;\n", " }} else if (Date.now() < root._bokeh_timeout) {\n", " setTimeout(run_inline_js, 100);\n", " } else if (!root._bokeh_failed_load) {\n", " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n", " root._bokeh_failed_load = true;\n", " }\n", " root._bokeh_is_initializing = false\n", " }\n", "\n", " function load_or_wait() {\n", " // Implement a backoff loop that tries to ensure we do not load multiple\n", " // versions of Bokeh and its dependencies at the same time.\n", " // In recent versions we use the root._bokeh_is_initializing flag\n", " // to determine whether there is an ongoing attempt to initialize\n", " // bokeh, however for backward compatibility we also try to ensure\n", " // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n", " // before older versions are fully initialized.\n", " if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n", " root._bokeh_is_initializing = false;\n", " root._bokeh_onload_callbacks = undefined;\n", " console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n", " load_or_wait();\n", " } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n", " setTimeout(load_or_wait, 100);\n", " } else {\n", " Bokeh = root.Bokeh;\n", " bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n", " root._bokeh_is_initializing = true\n", " root._bokeh_onload_callbacks = []\n", " if (!reloading && (!bokeh_loaded || is_dev)) {\n", "\troot.Bokeh = undefined;\n", " }\n", " load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n", "\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n", "\trun_inline_js();\n", " });\n", " }\n", " }\n", " // Give older versions of the autoload script a head-start to ensure\n", " // they initialize before we start loading newer version.\n", " setTimeout(load_or_wait, 100)\n", "}(window));" ], "application/vnd.holoviews_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n var py_version = '3.2.2'.replace('rc', '-rc.').replace('.dev', '-dev.');\n var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n var reloading = false;\n var Bokeh = root.Bokeh;\n var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks;\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n if (js_exports == null) js_exports = {};\n\n root._bokeh_onload_callbacks.push(callback);\n\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n run_callbacks();\n return null;\n }\n if (!reloading) {\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n }\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n window._bokeh_on_load = on_load\n\n function on_error() {\n console.error(\"failed to load \" + url);\n }\n\n var skip = [];\n if (window.requirejs) {\n window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n })\n require([\"jspanel-modal\"], function() {\n\ton_load()\n })\n require([\"jspanel-tooltip\"], function() {\n\ton_load()\n })\n require([\"jspanel-hint\"], function() {\n\ton_load()\n })\n require([\"jspanel-layout\"], function() {\n\ton_load()\n })\n require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n })\n require([\"jspanel-dock\"], function() {\n\ton_load()\n })\n require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n })\n require([\"notyf\"], function() {\n\ton_load()\n })\n root._bokeh_is_loading = css_urls.length + 9;\n } else {\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n }\n\n var existing_stylesheets = []\n var links = document.getElementsByTagName('link')\n for (var i = 0; i < links.length; i++) {\n var link = links[i]\n if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n }\n }\n for (var i = 0; i < css_urls.length; i++) {\n var url = css_urls[i];\n if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n }\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error;\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n } if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n for (var i = 0; i < urls.length; i++) {\n skip.push(urls[i])\n }\n } var existing_scripts = []\n var scripts = document.getElementsByTagName('script')\n for (var i = 0; i < scripts.length; i++) {\n var script = scripts[i]\n if (script.src != null) {\n\texisting_scripts.push(script.src)\n }\n }\n for (var i = 0; i < js_urls.length; i++) {\n var url = js_urls[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (var i = 0; i < js_modules.length; i++) {\n var url = js_modules[i];\n if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (const name in js_exports) {\n var url = js_exports[name];\n if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t on_load();\n\t}\n\tcontinue;\n }\n var element = 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events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n" }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "\n", "
\n", "\n", "\n", "\n", "\n", "\n", " \n", " \n", "\n", "\n", "
\n" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "import redpic as rp\n", "import numpy as np\n", "import holoviews as hv\n", "hv.extension('matplotlib')\n", "\n", "import warnings\n", "warnings.filterwarnings('ignore')" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:32.810397813Z", "start_time": "2023-08-21T04:49:32.592705756Z" } }, "outputs": [ { "data": { "text/plain": [ "'0.7.57'" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "rp.__version__" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Some plotting options" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:37.257583219Z", "start_time": "2023-08-21T04:49:37.150898994Z" } }, "outputs": [], "source": [ "%output size=100 backend='matplotlib' fig='png' dpi=300\n", "%opts Curve Scatter [aspect=3 show_grid=True]\n", "%opts Curve (linewidth=1 alpha=0.7 color='blue')\n", "%opts Scatter (alpha=0.7 s=0.5)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Define accelerator beamline parameters" ] }, { "cell_type": "code", "execution_count": 4, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:38.569087295Z", "start_time": "2023-08-21T04:49:38.561225733Z" } }, "outputs": [], "source": [ "acc = rp.accelerator.Accelerator(0.7, 5, 0.01)" ] }, { "cell_type": "code", "execution_count": 5, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:43.550908022Z", "start_time": "2023-08-21T04:49:43.503408649Z" } }, "outputs": [], "source": [ "# Unique name, z-position [m], Ez [MV/m], Ez(z) profile\n", "acc.add_accel('Acc. 1', 4.096, -1.1, 'Ez.dat')\n", "acc.add_accel('Acc. 2', 5.944, -1.1, 'Ez.dat')" ] }, { "cell_type": "code", "execution_count": 6, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:44.713150480Z", "start_time": "2023-08-21T04:49:44.701170202Z" } }, "outputs": [], "source": [ "# Unique name, z-position [m], Bz [T], Bz(z) profile\n", "acc.add_solenoid('Sol. 1', 0.450, -0.0580, 'Bz.dat')\n", "acc.add_solenoid('Sol. 2', 0.957, 0.0390, 'Bz.dat')\n", "acc.add_solenoid('Sol. 3', 2.107, 0.0250, 'Bz.dat')\n", "acc.add_solenoid('Sol. 4', 2.907, 0.0440, 'Bz.dat')\n", "acc.add_solenoid('Sol. 5', 3.670, 0.0400, 'Bz.dat')\n", "acc.add_solenoid('Sol. 6', 4.570, 0.0595, 'Bz.dat')\n", "acc.add_solenoid('Sol. 7', 5.470, 0.0590, 'Bz.dat')" ] }, { "cell_type": "code", "execution_count": 7, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:50.504253054Z", "start_time": "2023-08-21T04:49:49.490067327Z" } }, "outputs": [], "source": [ "acc.compile()" ] }, { "cell_type": "code", "execution_count": 8, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:51.402640821Z", "start_time": "2023-08-21T04:49:51.366170977Z" } }, "outputs": [], "source": [ "dim_z = hv.Dimension('z', unit='m')\n", "dim_Ez = hv.Dimension('Ez', unit='MV/m', label='$E_z$')\n", "dim_Bz = hv.Dimension('Bz', unit='Gs', label='$B_z$')" ] }, { "cell_type": "code", "execution_count": 9, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:53.477845292Z", "start_time": "2023-08-21T04:49:53.461565127Z" } }, "outputs": [], "source": [ "z = acc.z\n", "z_Ez = hv.Curve((z, acc.Ez(z)), kdims=dim_z, vdims=dim_Ez)\n", "z_Bz = hv.Curve((z, acc.Bz(z)*1e4), kdims=dim_z, vdims=dim_Bz)" ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:49:55.855037915Z", "start_time": "2023-08-21T04:49:54.719040649Z" } }, "outputs": [ { "data": { "text/html": [ "" ], "text/plain": [ ":Layout\n", " .Curve.I :Curve [z] (Ez)\n", " .Curve.II :Curve [z] (Bz)" ] }, "execution_count": 10, "metadata": { "application/vnd.holoviews_exec.v0+json": {} }, "output_type": "execute_result" } ], "source": [ "(z_Ez + z_Bz).cols(1)" ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:50:00.272241861Z", "start_time": "2023-08-21T04:49:59.196991142Z" } }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Accelerator structure.\n", "\tSolenoids:\n", "\t[ 0.45 m, -0.058 T, Bz.dat, Sol. 1, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 0.957 m, 0.039 T, Bz.dat, Sol. 2, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 2.107 m, 0.025 T, Bz.dat, Sol. 3, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 2.907 m, 0.044 T, Bz.dat, Sol. 4, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 3.67 m, 0.04 T, Bz.dat, Sol. 5, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 4.57 m, 0.0595 T, Bz.dat, Sol. 6, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 5.47 m, 0.059 T, Bz.dat, Sol. 7, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\tAccelerating modules:\n", "\t[ 4.096 m, -1.1 T, Ez.dat, Acc. 1, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\t[ 5.944 m, -1.1 T, Ez.dat, Acc. 2, 0.0 m, 0.0 rad, 0.0 m, 0.0 rad] \n", "\tQuadrupoles:\n", "\tCorrectors x:\n", "\tCorrectors y:\n", "\n" ] } ], "source": [ "print(acc)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Define beam parameters" ] }, { "cell_type": "code", "execution_count": 12, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:50:04.975535961Z", "start_time": "2023-08-21T04:50:04.950111005Z" } }, "outputs": [], "source": [ "beam = rp.beam.RadialUniformBeam(\n", " type=rp.constants.electron, \n", " energy = 1.32, # MeV\n", " current = 0.5e3, # A\n", " radius_x = 48e-3, # initial r (m)\n", " radius_y = 48e-3, # initial r (m)\n", " radius_z = 3.5,\n", " radius_xp = 2*35.0e-3, # initial r' (rad)\n", " radius_yp = 2*35.0e-3, # initial r' (rad)\n", " x = 0.0e-3, # horizontal centroid position (m)\n", " xp = 0.0e-3, # horizontal centroid angle (rad)\n", " y = 0, # vertical centroid position (m)\n", " normalized_emittance = 200e-6 # m*rad\n", ")" ] }, { "cell_type": "code", "execution_count": 13, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:23.773410148Z", "start_time": "2023-08-21T04:51:23.761815205Z" } }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "2023-08-31 21:35:33,649 - redpic.beam.base - INFO - Generate a radial-uniform beam with 10000 particles\n" ] } ], "source": [ "beam.generate(10_000)" ] }, { "cell_type": "code", "execution_count": 14, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:24.276511782Z", "start_time": "2023-08-21T04:51:24.243138343Z" } }, "outputs": [ { "data": { "text/html": [ "
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xyzpxpypz
00.034491-0.010901-1.1236850.100578-0.0311221.747093
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.....................
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10000 rows × 6 columns

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" ], "text/plain": [ " x y z px py pz\n", "0 0.034491 -0.010901 -1.123685 0.100578 -0.031122 1.747093\n", "1 0.007980 -0.003833 1.251044 0.022404 -0.010670 1.749303\n", "2 -0.022694 -0.010773 -0.128508 -0.067049 -0.031592 1.741746\n", "3 0.017086 0.014826 -2.608725 0.048956 0.043029 1.763242\n", "4 -0.021815 0.015455 0.520279 -0.062786 0.044937 1.759832\n", "... ... ... ... ... ... ...\n", "9995 0.018885 0.028316 1.360050 0.054502 0.082155 1.746065\n", "9996 -0.021948 0.040885 -2.615462 -0.064131 0.119014 1.759089\n", "9997 -0.016885 -0.017578 1.473440 -0.048364 -0.051265 1.740909\n", "9998 0.027568 -0.014905 -0.467425 0.080297 -0.042703 1.765850\n", "9999 0.035333 0.010626 0.145074 0.103711 0.031025 1.771395\n", "\n", "[10000 rows x 6 columns]" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "beam.df" ] }, { "cell_type": "code", "execution_count": 15, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:25.119828309Z", "start_time": "2023-08-21T04:51:25.105477791Z" } }, "outputs": [], "source": [ "dim_x = hv.Dimension('x', unit='m', range=(-0.1, 0.1))\n", "dim_y = hv.Dimension('y', unit='m', range=(-0.1, 0.1))\n", "dim_z = hv.Dimension('z', unit='m', range=(acc.z_start, acc.z_stop))\n", "dim_px = hv.Dimension('px', unit='MeV/c', label='$p_x$')\n", "dim_py = hv.Dimension('py', unit='MeV/c', label='$p_y$')" ] }, { "cell_type": "code", "execution_count": 16, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:25.840752841Z", "start_time": "2023-08-21T04:51:25.812781180Z" }, "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:35:33,772 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:35:33,789 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:35:33,791 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:35:33,801 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n" ] } ], "source": [ "beam_x_y = hv.Scatter(beam.df, kdims=[dim_x, dim_y])\n", "beam_z_x = hv.Scatter(beam.df, kdims=[dim_z, dim_x])\n", "beam_x_px = hv.Scatter(beam.df, kdims=[dim_x, dim_px])\n", "beam_y_py = hv.Scatter(beam.df, kdims=[dim_y, dim_py])" ] }, { "cell_type": "code", "execution_count": 17, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:28.102601880Z", "start_time": "2023-08-21T04:51:26.395789536Z" } }, "outputs": [ { "data": { "text/html": [ "" ], "text/plain": [ ":Layout\n", " .Scatter.I :Scatter [x,y] (z,px,py,pz)\n", " .Scatter.II :Scatter [z,x] (y,px,py,pz)\n", " .Scatter.III :Scatter [x,px] (y,z,py,pz)\n", " .Scatter.IV :Scatter [y,py] (x,z,px,pz)" ] }, "execution_count": 17, "metadata": { "application/vnd.holoviews_exec.v0+json": {} }, "output_type": "execute_result" } ], "source": [ "(beam_x_y + beam_z_x + beam_x_px + beam_y_py).cols(2)" ] }, { "cell_type": "code", "execution_count": 18, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:51:29.919787599Z", "start_time": "2023-08-21T04:51:29.897315607Z" } }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Beam parameters:\n", " Type\telectron\n", " Distribution\tradial-uniform\n", " Particles\t10000\n", " Current\t500.0 A\n", " Energy\t1.32 MeV\n", " Total momentum\t1.7582483378931433 MeV/c\n", " Rel. factor\t3.583175582013202\n", " Radius x\t48.0 mm\n", " Radius y\t48.0 mm\n", " Radius z\t3.5 m\n", " Radius x prime\t70.0 mrad\n", " Radius y prime\t70.0 mrad\n", " Horizontal centroid position\t0.0 mm\n", " Vertical centroid position\t0.0 mm\n", " Horizontal centroid angle\t0.0 mrad\n", " Vertical centroid angle\t0.0 mrad\n", " Normalized emittance x\t200.0 mm*mrad\n", " Normalized emittance y\t200.0 mm*mrad\n", " \n" ] } ], "source": [ "print(beam)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Run simulation" ] }, { "cell_type": "code", "execution_count": 19, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:52:14.576354829Z", "start_time": "2023-08-21T04:51:31.944371521Z" } }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "z = 4.98 m (99.5 %) " ] } ], "source": [ "rp_sim = rp.solver.Simulation(beam, acc)\n", "rp_sim.track()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Plot the simulation results" ] }, { "cell_type": "code", "execution_count": 20, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:52:18.994876856Z", "start_time": "2023-08-21T04:52:18.969867946Z" } }, "outputs": [], "source": [ "def plot(i):\n", " df = rp_sim.result[i]\n", " rp_z_x = hv.Scatter(df, kdims=[dim_z, dim_x], label='redpic')\n", " return rp_z_x" ] }, { "cell_type": "code", "execution_count": 21, "metadata": { "ExecuteTime": { "end_time": "2023-08-21T04:52:43.346990026Z", "start_time": "2023-08-21T04:52:19.730476596Z" } }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,502 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,514 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,522 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,533 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,539 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,548 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,551 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,558 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,564 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,570 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,575 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,584 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,602 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,633 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,639 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,644 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,657 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,664 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,668 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n", "WARNING:param.Scatter: Chart elements should only be supplied a single kdim\n", "2023-08-31 21:36:12,672 - param.Scatter - WARNING - Chart elements should only be supplied a single kdim\n" ] }, { "data": {}, "metadata": {}, "output_type": "display_data" }, { "data": { "application/vnd.holoviews_exec.v0+json": "", "text/html": [ "
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\n", "
\n", "" ], "text/plain": [ ":HoloMap [z]\n", " :Scatter [z,x] (y,px,py,pz,Bx,By,Bz,Ex,Ey,Ez)" ] }, "metadata": { "application/vnd.holoviews_exec.v0+json": { "id": "p1002" } }, "output_type": "display_data" } ], "source": [ "items = [(i, plot(i)) for i in list(rp_sim.result.keys())]\n", "\n", "holomap = hv.HoloMap(items, kdims = ['z'])\n", "\n", "hv.output(holomap, widget_location='bottom')" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.11.0" }, "widgets": { "application/vnd.jupyter.widget-state+json": { "state": {}, "version_major": 2, "version_minor": 0 } } }, "nbformat": 4, "nbformat_minor": 4 }